3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12129

Details:

PFam ID : PF12129

PFam Domain Description : Male germ-cell putative homeodomain transcription factor

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 40

Average sequence length: 138.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12129	D6RJJ1_MOUSE_3_46	69.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12129	E9C1X4_9EUKA_716_895	100

Sequence based PCA Plot of the family - PF12129 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay