3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12125

Details:

PFam ID : PF12125

PFam Domain Description : D domain of beta-TrCP

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 20

Average sequence length: 35.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12125	P89923_9VIRU_209_252	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12125	E4Y7G6_OIKDI_41_80	100

Sequence based PCA Plot of the family - PF12125 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay