3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12121

Details:

PFam ID : PF12121

PFam Domain Description : Dermaseptin

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 36

Average sequence length: 23.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12121	DMS7_PHAJA_1_18	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12121	Q0VZ37_PHYHY_46_68	91.4

Sequence based PCA Plot of the family - PF12121 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay