3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12110

Details:

PFam ID : PF12110

PFam Domain Description : Nuclear protein 96

Number of Sequence in 50% Dataset : 80

Number of Sequence in Full Dataset : 142

Average sequence length: 271.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12110	Q4SPS0_TETNG_1328_1464	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12110	C4Q4W6_SCHMA_221_588	100

Sequence based PCA Plot of the family - PF12110 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=139 Length=8
Motif2 Start=211 Length=8
Motif3 Start=93 Length=8
Motif4 Start=256 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay