3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12104

Details:

PFam ID : PF12104

PFam Domain Description : T cell CD4 receptor C terminal region

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 12

Average sequence length: 25.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12104	D9MNI7_LEPIN_30_107	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12104	A6MAP0_MONDO_436_461	100

Sequence based PCA Plot of the family - PF12104 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay