3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12100

Details:

PFam ID : PF12100

PFam Domain Description : Domain of unknown function (DUF3576)

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 77

Average sequence length: 99.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12100	B7AIL0_9BACE_299_495	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12100	Q4FNQ9_PELUB_66_173	98.6

Sequence based PCA Plot of the family - PF12100 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=92 Length=8
Motif2 Start=30 Length=18
Motif3 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay