3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12089

Details:

PFam ID : PF12089

PFam Domain Description : Transmembrane domain of unknown function (DUF3566)

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 109

Average sequence length: 116.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12089	C7NID7_KYTSD_39_162	14.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12089	C7NID7_KYTSD_39_162	100

Sequence based PCA Plot of the family - PF12089 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=30 Length=21
Motif2 Start=21 Length=8
Motif3 Start=12 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay