3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12081

Details:

PFam ID : PF12081

PFam Domain Description : GldM N-terminal domain

Number of Sequence in 50% Dataset : 50

Number of Sequence in Full Dataset : 89

Average sequence length: 181.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12081	A9DPY7_9FLAO_31_208	34.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12081	A1ZV12_9BACT_32_205	98.8

Sequence based PCA Plot of the family - PF12081 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay