3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12080

Details:

PFam ID : PF12080

PFam Domain Description : GldM C-terminal domain

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 80

Average sequence length: 173.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12080	A9DKI1_9FLAO_103_272	95.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12080	D7JE54_9BACT_327_514	100

Sequence based PCA Plot of the family - PF12080 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=74 Length=8
Motif2 Start=7 Length=28

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay