3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12078

Details:

PFam ID : PF12078

PFam Domain Description : Domain of unknown function (DUF3557)

Number of Sequence in 50% Dataset : 186

Number of Sequence in Full Dataset : 423

Average sequence length: 144.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12078	B1MKX6_MYCA9_1_561	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12078	A8WLH9_CAEBR_142_314	100

Sequence based PCA Plot of the family - PF12078 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=29
Motif2 Start=163 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay