3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12077

Details:

PFam ID : PF12077

PFam Domain Description : Transmembrane protein of unknown function (DUF3556)

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 31

Average sequence length: 519.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12077	B1MKX6_MYCA9_1_561	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12077	B1MKX6_MYCA9_1_561	100

Sequence based PCA Plot of the family - PF12077 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=125 Length=8
Motif2 Start=320 Length=8
Motif3 Start=480 Length=11
Motif4 Start=383 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay