3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12076

Details:

PFam ID : PF12076

PFam Domain Description : WAX2 C-terminal domain

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 62

Average sequence length: 147.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12076	D7U5U1_VITVI_1_52	72.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12076	D5AD47_PICSI_49_221	100

Sequence based PCA Plot of the family - PF12076 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=11
Motif2 Start=98 Length=11
Motif3 Start=19 Length=8
Motif4 Start=86 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay