3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12075

Details:

PFam ID : PF12075

PFam Domain Description : KN motif

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 37

Average sequence length: 40.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12075	C3ZFM5_BRAFL_254_291	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12075	C3ZFM5_BRAFL_254_291	100

Sequence based PCA Plot of the family - PF12075 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=21 Length=8
Motif2 Start=12 Length=8
Motif3 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay