3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12074

Details:

PFam ID : PF12074

PFam Domain Description : Domain of unknown function (DUF3554)

Number of Sequence in 50% Dataset : 65

Number of Sequence in Full Dataset : 108

Average sequence length: 309.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12074	Q754A3_ASHGO_387_673	90.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12074	E9H7X5_DAPPU_357_707	98.1

Sequence based PCA Plot of the family - PF12074 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=34 Length=8
Motif4 Start=67 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay