3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12068

Details:

PFam ID : PF12068

PFam Domain Description : Domain of unknown function (DUF3548)

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 59

Average sequence length: 155.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12068	C4QVP5_PICPG_9_173	68

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12068	Q4TD20_TETNG_1_131	100

Sequence based PCA Plot of the family - PF12068 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=89 Length=8
Motif3 Start=107 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay