3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12066

Details:

PFam ID : PF12066

PFam Domain Description : Domain of unknown function (DUF3546)

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 102

Average sequence length: 100.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12066	Q28FS2_XENTR_151_207	83.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12066	B3S4B2_TRIAD_151_264	100

Sequence based PCA Plot of the family - PF12066 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=34 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay