3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12064

Details:

PFam ID : PF12064

PFam Domain Description : Domain of unknown function (DUF3544)

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 13

Average sequence length: 159

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12064	F1RDH9_DANRE_412_609	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12064	F1RDH9_DANRE_412_609	100

Sequence based PCA Plot of the family - PF12064 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay