3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12060

Details:

PFam ID : PF12060

PFam Domain Description : Domain of unknown function (DUF3541)

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 36

Average sequence length: 219.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12060	A9FT65_SORC5_20_123	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12060	E1V6H9_HALED_33_262	100

Sequence based PCA Plot of the family - PF12060 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=32 Length=8
Motif2 Start=157 Length=11
Motif3 Start=200 Length=22

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay