3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12057

Details:

PFam ID : PF12057

PFam Domain Description : Domain of unknown function (DUF3538)

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 27

Average sequence length: 117.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12057	Q4RDQ1_TETNG_8_53	37.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12057	E0VZR7_PEDHC_336_476	100

Sequence based PCA Plot of the family - PF12057 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay