3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12055

Details:

PFam ID : PF12055

PFam Domain Description : Domain of unknown function (DUF3536)

Number of Sequence in 50% Dataset : 42

Number of Sequence in Full Dataset : 94

Average sequence length: 241.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12055	Q728Y0_DESVH_406_584	97.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12055	E8R431_ISOPI_338_623	100

Sequence based PCA Plot of the family - PF12055 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=11 Length=17
Motif2 Start=40 Length=8
Motif3 Start=77 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay