3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12054

Details:

PFam ID : PF12054

PFam Domain Description : Domain of unknown function (DUF3535)

Number of Sequence in 50% Dataset : 61

Number of Sequence in Full Dataset : 122

Average sequence length: 396.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12054	A9V736_MONBE_614_899	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12054	F2QQT3_PICPA_640_1123	100

Sequence based PCA Plot of the family - PF12054 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=424 Length=8
Motif2 Start=313 Length=8
Motif3 Start=357 Length=8
Motif4 Start=25 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay