3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12043

Details:

PFam ID : PF12043

PFam Domain Description : Domain of unknown function (DUF3527)

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 67

Average sequence length: 202.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12043	B9GJ70_POPTR_696_799	57.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12043	B9HKU3_POPTR_241_596	100

Sequence based PCA Plot of the family - PF12043 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=93 Length=8
Motif2 Start=244 Length=8
Motif3 Start=182 Length=8
Motif4 Start=264 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay