3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12042

Details:

PFam ID : PF12042

PFam Domain Description : Tubuliform egg casing silk strands structural domain

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 84

Average sequence length: 151.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12042	D2MLB7_9BACT_1_113	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12042	A5Y0M2_9ARAC_114_243	100

Sequence based PCA Plot of the family - PF12042 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay