3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12038

Details:

PFam ID : PF12038

PFam Domain Description : Domain of unknown function (DUF3524)

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 66

Average sequence length: 156.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12038	A7SFU4_NEMVE_2_63	92.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12038	Q1NQW9_9DELT_4_181	100

Sequence based PCA Plot of the family - PF12038 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=129 Length=8
Motif2 Start=7 Length=8
Motif3 Start=37 Length=11
Motif4 Start=97 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay