3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12037

Details:

PFam ID : PF12037

PFam Domain Description : Domain of unknown function (DUF3523)

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 95

Average sequence length: 224.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12037	Q4XHS6_PLACH_1_119	18.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12037	A9V566_MONBE_33_292	100

Sequence based PCA Plot of the family - PF12037 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=59 Length=8
Motif2 Start=228 Length=8
Motif3 Start=7 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay