3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12034

Details:

PFam ID : PF12034

PFam Domain Description : Domain of unknown function (DUF3520)

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 158

Average sequence length: 175.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12034	E9S7F6_RUMAL_361_542	82.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12034	E9S7F6_RUMAL_361_542	100

Sequence based PCA Plot of the family - PF12034 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=13 Length=8
Motif2 Start=118 Length=8
Motif3 Start=82 Length=8
Motif4 Start=43 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay