3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12030

Details:

PFam ID : PF12030

PFam Domain Description : Domain of unknown function (DUF3517)

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 34

Average sequence length: 313.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12030	B2AVT7_PODAN_2138_2495	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12030	B2AVT7_PODAN_2138_2495	100

Sequence based PCA Plot of the family - PF12030 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=89 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay