3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12029

Details:

PFam ID : PF12029

PFam Domain Description : Domain of unknown function (DUF3516)

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 143

Average sequence length: 432.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12029	E6LXW2_9ACTO_385_923	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12029	E6LXW2_9ACTO_385_923	100

Sequence based PCA Plot of the family - PF12029 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=276 Length=8
Motif2 Start=156 Length=11
Motif3 Start=512 Length=8
Motif4 Start=345 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay