3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12022

Details:

PFam ID : PF12022

PFam Domain Description : Domain of unknown function (DUF3510)

Number of Sequence in 50% Dataset : 43

Number of Sequence in Full Dataset : 94

Average sequence length: 123.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12022	A0CKT7_PARTE_470_583	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12022	E9AU39_LEIME_775_926	100

Sequence based PCA Plot of the family - PF12022 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=95 Length=8
Motif3 Start=35 Length=8
Motif4 Start=115 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay