3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12019

Details:

PFam ID : PF12019

PFam Domain Description : Type II transport protein GspH

Number of Sequence in 50% Dataset : 324

Number of Sequence in Full Dataset : 597

Average sequence length: 119.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12019	F2U6X0_9EUKA_219_453	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12019	E8RFQ8_9DELT_64_171	80

Sequence based PCA Plot of the family - PF12019 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=31
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay