3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12017

Details:

PFam ID : PF12017

PFam Domain Description : Transposase protein

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 65

Average sequence length: 188.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12017	B4NPV4_DROWI_1_112	94.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12017	B8R3B1_9HYME_16_280	98.4

Sequence based PCA Plot of the family - PF12017 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=92 Length=8
Motif3 Start=56 Length=8
Motif4 Start=16 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay