3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12015

Details:

PFam ID : PF12015

PFam Domain Description : Domain of unknown function (DUF3507)

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 32

Average sequence length: 164.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12015	B3LU62_YEAS1_21_205	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12015	B3LU62_YEAS1_21_205	100

Sequence based PCA Plot of the family - PF12015 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=44 Length=8
Motif3 Start=139 Length=8
Motif4 Start=90 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay