3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12012

Details:

PFam ID : PF12012

PFam Domain Description : Domain of unknown function (DUF3504)

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 64

Average sequence length: 144.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12012	B0XJ98_CULQU_13_97	85.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12012	Q4T0X5_TETNG_142_301	98.4

Sequence based PCA Plot of the family - PF12012 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=98 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay