3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12011

Details:

PFam ID : PF12011

PFam Domain Description : Domain of unknown function (DUF3503)

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 17

Average sequence length: 159.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12011	NTP2_MCV1_1_177	16.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12011	NTP2_MCV1_1_177	100

Sequence based PCA Plot of the family - PF12011 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=159 Length=8
Motif2 Start=107 Length=8
Motif3 Start=5 Length=8
Motif4 Start=46 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay