3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12010

Details:

PFam ID : PF12010

PFam Domain Description : Domain of unknown function (DUF3502)

Number of Sequence in 50% Dataset : 55

Number of Sequence in Full Dataset : 113

Average sequence length: 132.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12010	C7H4G1_9FIRM_379_459	94.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12010	C6JDQ8_9FIRM_337_485	100

Sequence based PCA Plot of the family - PF12010 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=79 Length=8
Motif3 Start=138 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay