3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12009

Details:

PFam ID : PF12009

PFam Domain Description : Telomerase ribonucleoprotein complex - RNA binding domain

Number of Sequence in 50% Dataset : 79

Number of Sequence in Full Dataset : 164

Average sequence length: 124.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12009	C5LD18_9ALVE_231_353	93.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12009	Q5CTD8_CRYPV_454_615	100

Sequence based PCA Plot of the family - PF12009 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=71 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay