3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12008

Details:

PFam ID : PF12008

PFam Domain Description : Type I restriction and modification enzyme - subunit R C terminal

Number of Sequence in 50% Dataset : 116

Number of Sequence in Full Dataset : 346

Average sequence length: 260.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12008	D4X797_9BURK_715_983	83.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12008	D4X797_9BURK_715_983	99.7

Sequence based PCA Plot of the family - PF12008 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay