3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12004

Details:

PFam ID : PF12004

PFam Domain Description : Domain of unknown function (DUF3498)

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 45

Average sequence length: 313.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12004	A7SKG2_NEMVE_702_1021	34.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12004	E9QBX6_DANRE_690_1121	100

Sequence based PCA Plot of the family - PF12004 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=205 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay