3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12003

Details:

PFam ID : PF12003

PFam Domain Description : Domain of unknown function (DUF3497)

Number of Sequence in 50% Dataset : 76

Number of Sequence in Full Dataset : 155

Average sequence length: 204.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12003	B3S1P6_TRIAD_529_723	61.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12003	BAI1_HUMAN_653_875	96.1

Sequence based PCA Plot of the family - PF12003 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=188 Length=8
Motif3 Start=17 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay