3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12002

Details:

PFam ID : PF12002

PFam Domain Description : MgsA AAA+ ATPase C terminal

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 1155

Average sequence length: 163.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12002	E9Q2C1_MOUSE_78_183	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12002	A9SNB4_PHYPA_176_283	99.9

Sequence based PCA Plot of the family - PF12002 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=67 Length=17
Motif2 Start=18 Length=17
Motif3 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay