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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12000
Details:

PFam ID : PF12000

PFam Domain Description : Gkycosyl transferase family 4 group

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 119

Average sequence length: 165.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF12000D5AQM4_RHOCB_26_19492.1
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF12000A1W3K0_ACISJ_23_212100
Sequence based PCA Plot of the family - PF12000 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=98 Length=8
Motif2 Start=179 Length=8
Motif3 Start=73 Length=11
Motif4 Start=161 Length=11
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay