3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12000 Details: PFam ID : PF12000 PFam Domain Description : Gkycosyl transferase family 4 group Number of Sequence in 50% Dataset : 39 Number of Sequence in Full Dataset : 119 Average sequence length: 165.6 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF12000D5AQM4_RHOCB_26_19492.1 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF12000A1W3K0_ACISJ_23_212100 Sequence based PCA Plot of the family - PF12000 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 4 motifsMotif1 Start=98 Length=8Motif2 Start=179 Length=8Motif3 Start=73 Length=11Motif4 Start=161 Length=11 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF12000
PFam Domain Description : Gkycosyl transferase family 4 group
Number of Sequence in 50% Dataset : 39
Number of Sequence in Full Dataset : 119
Average sequence length: 165.6
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER