3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11997

Details:

PFam ID : PF11997

PFam Domain Description : Domain of unknown function (DUF3492)

Number of Sequence in 50% Dataset : 54

Number of Sequence in Full Dataset : 153

Average sequence length: 254.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11997	A9EDS8_9RHOB_7_289	88.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11997	A9EDS8_9RHOB_7_289	100

Sequence based PCA Plot of the family - PF11997 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=91 Length=8
Motif4 Start=111 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay