3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11992

Details:

PFam ID : PF11992

PFam Domain Description : Domain of unknown function (DUF3488)

Number of Sequence in 50% Dataset : 116

Number of Sequence in Full Dataset : 209

Average sequence length: 315.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11992	A0LSM4_ACIC1_253_312	99.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11992	D0LRR0_HALO1_2_385	100

Sequence based PCA Plot of the family - PF11992 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=145 Length=8
Motif3 Start=79 Length=8
Motif4 Start=136 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay