3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11991

Details:

PFam ID : PF11991

PFam Domain Description : Tryptophan dimethylallyltransferase

Number of Sequence in 50% Dataset : 114

Number of Sequence in Full Dataset : 153

Average sequence length: 313.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11991	D1ZJ37_SORMK_55_447	96.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11991	D1ZJ37_SORMK_55_447	100

Sequence based PCA Plot of the family - PF11991 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=98 Length=8
Motif2 Start=124 Length=8
Motif3 Start=70 Length=8
Motif4 Start=44 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay