3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11987

Details:

PFam ID : PF11987

PFam Domain Description : Translation-initiation factor 2

Number of Sequence in 50% Dataset : 68

Number of Sequence in Full Dataset : 1229

Average sequence length: 108.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11987	B3F1U0_9INFA_1_25	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11987	Q56WR4_ARATH_2_53	100

Sequence based PCA Plot of the family - PF11987 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=64 Length=8
Motif2 Start=79 Length=8
Motif3 Start=22 Length=8
Motif4 Start=111 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay