3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11986

Details:

PFam ID : PF11986

PFam Domain Description : Influenza A Proapoptotic protein

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 266

Average sequence length: 82.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11986	B3F1U0_9INFA_1_25	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11986	F0TSM5_9INFA_1_38	97.7

Sequence based PCA Plot of the family - PF11986 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay