3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11983

Details:

PFam ID : PF11983

PFam Domain Description : Domain of unknown function (DUF3484)

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 52

Average sequence length: 73.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11983	C3BP10_9BACI_346_410	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11983	E6LCJ2_9ENTE_377_445	92.1

Sequence based PCA Plot of the family - PF11983 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=5 Length=27
Motif2 Start=58 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay