3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11982

Details:

PFam ID : PF11982

PFam Domain Description : Domain of unknown function (DUF3483)

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 35

Average sequence length: 219.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11982	Q0BW32_GRABC_2_232	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11982	Q0BW32_GRABC_2_232	100

Sequence based PCA Plot of the family - PF11982 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=133 Length=8
Motif2 Start=45 Length=11
Motif3 Start=203 Length=11
Motif4 Start=192 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay