3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11980

Details:

PFam ID : PF11980

PFam Domain Description : Domain of unknown function (DUF3481)

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 18

Average sequence length: 82.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11980	Q4SQ72_TETNG_660_774	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11980	F1QXE5_DANRE_842_920	70

Sequence based PCA Plot of the family - PF11980 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay