3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11979

Details:

PFam ID : PF11979

PFam Domain Description : Domain of unknown function (DUF3480)

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 43

Average sequence length: 259.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11979	B7P4F7_IXOSC_770_907	70

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11979	Q1RLE4_CIOIN_350_709	100

Sequence based PCA Plot of the family - PF11979 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=234 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay